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, Bioinformation Engineering Laboratory, Department of Biotechnology, Graduate School of Agriculture and Life Sciences, The University of Tokyo, Japan
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Journal of Nucleic Acids Investigation Vol. 4 No. 1 (2013) - Articles
A new entropy model for RNA: part II. Persistence-related entropic contributions to RNA secondary structure free energy calculations
Abstract PDF APPENDIX -
Journal of Nucleic Acids Investigation Vol. 5 No. 1 (2014) - Early Release
A new entropy model for RNA: part IV, The Minimum Free Energy (mFE) and the thermodynamically most-probable folding pathway (TMPFP)
Abstract PDF Supplement S2: Methods: the vsfold5 algorithm Prediction of RNA Pseudoknots Using Heuristic Modeling with Mapping and Sequential Folding -
Journal of Nucleic Acids Investigation Vol. 5 No. 1 (2014) - Early Release
A new entropy model for RNA: part V, Incorporating the Flory-Huggins model in structure prediction and folding
Abstract PDF