Search

Search Results

• 

  A new entropy model for RNA: part III. Is the folding free energy landscape of RNA funnel shaped?

  Wayne Dawson, Toshikuni Takai, Nobuharu Ito, Kentaro Shimizu, Gota Kawai

  03-11-2014

  Published: 3 November 2014

  5024

  PDF: 978
• 

  A new entropy model for RNA: part II. Persistence-related entropic contributions to RNA secondary structure free energy calculations

  Wayne Dawson, Kenji Yamamoto, Kentaro Shimizu, Gota Kawai

  e2

  15-03-2013

  Published: 15 March 2013

  3819

  PDF: 673

  APPENDIX: 248
• 

  A new entropy model for RNA: part IV, The Minimum Free Energy (mFE) and the thermodynamically most-probable folding pathway (TMPFP)

  Wayne Dawson, Gota Kawai

  13-07-2015

  Published: 13 July 2015

  1520

  PDF: 787

  Supplement S2: Methods: the vsfold5 algorithm: 0

  Prediction of RNA Pseudoknots Using Heuristic Modeling with Mapping and Sequential Folding: 0
• 

  A new entropy model for RNA: part I. A critique of the standard Jacobson-Stockmayer model applied to multiple cross links

  Wayne Dawson, Kenji Yamamoto, Gota Kawai

  e3

  24-07-2012

  Published: 24 July 2012

  3283

  PDF: 594

  APPENDICES: 273

  A Physical Origin for Functional Domain Structure in Nucleic Acids as Evidenced by Cross-linking Entropy: II: 0

  A Physical Origin for Functional Domain Structure in Nucleic Acids as Evidenced by Cross-linking Entropy: I: 0

  Modeling the Chain Entropy of Biopolymers: Unifying o Different Random Walk Models under One Framework: 0
• 

  A new entropy model for RNA: part V, Incorporating the Flory-Huggins model in structure prediction and folding

  Wayne Dawson, Gota Kawai

  13-07-2015

  Published: 13 July 2015

  1533

  PDF: 1158